rpanel: Simple Interactive Controls for R Functions Using the tcltk Package

In a variety of settings it is extremely helpful to be able to apply R functions through buttons, sliders and other types of graphical control. This is particularly true in plotting activities where immediate communication between such controls and a graphical display allows the user to interact with a plot in a very effective manner. The tcltk package provides extensive tools for this and the aim of the rpanel package is to provide simple and well documented functions which make these facilities as accessible as possible. In addition, the operations which form the basis of communication within tcltk are managed in a way which allows users to write functions with a more standard form of parameter passing. This paper describes the basic design of the software and illustrates it on a variety of examples of interactive control of graphics. The tkrplot system is used to allow plots to be integrated with controls into a single panel. An example of the use of a graphical image, and the ability to interact with this, is also discussed.

Modelling Garbage Collection Algorithms --- Extend abstract

We show how abstract requirements of garbage collection can be captured using temporal logic. The temporal logic specification can then be used as a basis for process algebra specifications which can involve varying amounts of parallelism. We present two simple CCS specifications as an example, followed by a more complex specification of the cyclic reference counting algorithm. The verification of such algorithms is then briefly discussed

3D Computational Ghost Imaging

Computational ghost imaging retrieves the spatial information of a scene using a single pixel detector. By projecting a series of known random patterns and measuring the back reflected intensity for each one, it is possible to reconstruct a 2D image of the scene. In this work we overcome previous limitations of computational ghost imaging and capture the 3D spatial form of an object by using several single pixel detectors in different locations. From each detector we derive a 2D image of the object that appears to be illuminated from a different direction, using only a single digital projector as illumination. Comparing the shading of the images allows the surface gradient and hence the 3D form of the object to be reconstructed. We compare our result to that obtained from a stereo- photogrammetric system utilizing multiple high resolution cameras. Our low cost approach is compatible with consumer applications and can readily be extended to non-visible wavebands.Comment: 13pages, 4figure

Intentional Listening: Practicing a Vital Inclusive Behavior

In a classroom setting intentional listening has six distinctive stages Actively inviting classmates thoughts and opinions reflectively considering every aspect of what others say thanking others for expressing their ideas and beliefs putting what one has heard in a broader societal context connecting peers with similar ideas and insights and identifying the point of intersection between what you have heard and your own intuitions and experiences In instructional environments intentional listening takes practic

Holographic aberration correction: optimising the stiffness of an optical trap deep in the sample

We investigate the effects of 1st order spherical aberration and defocus upon the stiffness of an optical trap tens of μm into the sample. We control both these aberrations with a spatial light modulator. The key to maintain optimum trap stiffness over a range of depths is a specific non-trivial combination of defocus and axial objective position. This optimisation increases the trap stiffness by up to a factor of 3 and allows trapping of 1μm polystyrene beads up to 50μm deep in the sample.<p></p&gt

Administering an eye anaesthetic: principles, techniques, and complications

The trigeminal nerve carries the sensory innervation of the eye and adnexa in three divisions: ophthalmic, maxillary, and mandibular. The sensory fibres of the eye and adnexa are found in the ophthalmic division – with the exception of a portion of the sensory input from the lower lid, which is carried by the maxillary division. Blocking the sensory fibres provides anaesthesia so that no pain is felt.The motor supply of the extraocular muscles and levator palpebrae superioris is carried by the oculomotor (III), trochlear (IV), and abducens (VI) nerves. Paralysing these muscles by blocking their motor supply provides akinesia so that the eye does not move during surgery.The motor supply of the orbicularis oculi, which is responsible for the gentle and forcible closure of the eye, is carried by the facial nerve (VII). Blocking these fibres will provide better surgical exposure. It also reduces the risk of forcing out the ocular contents if the patient tries to close his eyelids forcibly after the surgeon opens the globe

The spatial effect of protein deuteration on nitroxide spin-label relaxation:implications for EPR distance measurement

This work was supported by a Wellcome Trust Senior Fellowship (095062) to T.O.-H. The Authors would also like to acknowledge funding from The MRC – United Kingdom, Grant G1100021.Pulsed electron-electron double resonance (PELDOR) coupled with site-directed spin labeling is a powerful technique for the elucidation of protein or nucleic acid, macromolecular structure and interactions. The intrinsic high sensitivity of electron paramagnetic resonance enables measurement on small quantities of bio-macromolecules, however short relaxation times impose a limit on the sensitivity and size of distances that can be measured using this technique. The persistence of the electron spin-echo, in the PELDOR experiment, is one of the most crucial limitations to distance measurement. At a temperature of around 50 K one of the predominant factors affecting persistence of an echo, and as such, the sensitivity and measurable distance between spin labels, is the electron spin echo dephasing time (Tm). It has become normal practice to use deuterated solvents to extend Tm and recently it has been demonstrated that deuteration of the underlying protein significantly extends Tm. Here we examine the spatial effect of segmental deuteration of the underlying protein, and also explore the concentration and temperature dependence of highly deuterated systems.Publisher PDFPeer reviewe